Get literature metadata based on a species list
sp_lit_meta(x, from = "pubmed", limit = 25, progress = TRUE)
| x | input |
|---|---|
| from | (character) source to search for literature. one of more of pubmed, bhl. default: pubmed |
| limit | (integer/numeric) number of literature search results to return |
| progress | (logical) print a progress bar. default: |
a list
See spplit_auth for authentication
if (FALSE) { # occurrence data library(spocc) geom <- 'POLYGON((-124.07 41.48,-119.99 41.48,-119.99 35.57,-124.07 35.57,-124.07 41.48))' res <- occ(geometry = geom, from = "gbif", limit = 15) library(spocc) taxa <- c('Pinus contorta', 'Accipiter striatus') res <- occ(query=taxa, from = c("gbif", "bison"), limit = 15) res res$gbif res$bison # get literature metadata x <- sp_lit_meta(x = res, from = c("pubmed", "bhl")) x x$gbif x$gbif$pubmed x$gbif$bhl x$bison x$bison$pubmed x$bison$bhl }