Extract scientific names from articles

Source: R/sp_lit_names.R

Depends on non-CRAN package namext

sp_lit_names(x, progress = TRUE, ...)

Arguments

x

An object of class sp_lit_text or sp_lit_text_one
progress

(logical) print a progress bar. default: TRUE
...

arguments passed on to namext::name_extract()

Value

a data.frame

Details

make sure to install gnfinder first https://github.com/gnames/gnfinder

Examples

if (FALSE) {
library(spocc)
taxa <- c('Pinus contorta', 'Accipiter striatus')
res <- occ(query=taxa, from = c("gbif", "bison"), limit = 15)
w <- sp_lit_meta(x = res, from = c("pubmed", "bhl"))
out <- sp_lit_text(x = w[[1]], from = c("pubmed", "bhl"))
sp_lit_names(x = out$bhl$OcrText)
sp_lit_names(x = out$bhl)
}